The impact of prolonged frozen storage on the preparation quality of bird skins and skeletons in zoological collections.

Specimens from zoological collections play a pivotal role in improving scientific knowledge in many natural science disciplines. To guarantee an optimum state of conservation and ensure their usefulness, the preparation process employed is crucial. Skins and skeletons are key elements in vertebrate scientific collections and, ideally, are prepared from recently deceased animals; however, specimens are often stored in a frozen state for a long time (years) prior to preparation. Whether the duration of this frozen state has a deleterious effect on preparation quality has rarely been studied. The main objective of this study was thus to contribute towards research into zoological preparation by testing to see whether prolonged frozen storage hinders the preparation of bird skins and skeletons. We used the common buzzard (Buteo buteo) and the barn owl (Tyto alba) as biological models. Our results showed that long-term frozen storage led to weight loss, bone marrow acidification and solidification, and hampered skin preparation. The necropsy affected weight loss and decreased the skin tear resistance, probably due to tissue dehydration. Thus, prolonged frozen storage appears to have a harmful effect on the preparation quality of vertebrate specimens. Since frozen storage could ultimately have an impact on the conservation and scientific use of museum specimens, practices should be implemented to minimise the amount of time specimens are frozen or to mitigate any detrimental effects. More importance should be attached to research on zoological preparation since it is fundamental for optimising the quality, conservation status, and value of museum collections.

A comparative evaluation of thermal camera and visual counting methods for primate census in a riparian forest at the Lower Kinabatangan Wildlife Sanctuary (LKWS), Malaysian Borneo.

A number of primate census techniques have been developed over the past half-century, each of which have advantages and disadvantages in terms of resources required by researchers (e.g., time and costs), availability of technologies, and effectiveness in different habitat types. This study aims to explore the effectiveness of a thermal imaging technique to estimate the group size of different primate species populations in a degraded riparian forest in the Lower Kinabatangan Wildlife Sanctuary (LKWS), Sabah. We compared this survey technique to the conventional visual counting method along the riverbank. For 38 days, a total of 138 primate groups were observed by thermal camera and visually throughout the study. Optimal conditions for the thermal camera were clear weather, not more than 100 m distance from the observer to the targeted area, boat speed ranging between 5 and 12 km/h, and early morning between 04:30 and 05:30 am. The limitations of the thermal cameras include the inability to identify individual species, sexes, age classes, and also to discern between animals closely aggregated (i.e., mothers with attached infants). Despite these limitations with the thermal camera technique, 1.78 times more primates were detected than counting by eye (p < 0.001), showing the potential benefit of using thermal cameras as an important tool in primate surveys. Nevertheless, ground truthing must be conducted immediately after, or simultaneously during, the thermal survey to verify the species of animals observed on the thermal imagery.

Implementing long-term baselines into primate tool-use studies.

Studies on primate tool-use often involve the use of baseline conditions, as they allow for the examination of any differences in the subjects' behavior before and after the introduction of a tool-use task. While these baseline conditions can be powerful for identifying the relative contributions of individual and social learning for the acquisition of tool-use behaviors in naïve (usually captive) subjects, many have criticized them for being too short, and not allowing enough time for the behavior to develop spontaneously. Furthermore, some wild tool-use behaviors such as chimpanzee nut-cracking require animals to manipulate and familiarize themselves with the materials of the behavior within a "sensitive learning period" before it develops later on in life. One solution to this problem is to implement long-term baselines, in which, with collaboration with zoological institutions, the materials of the behavior are left in the enclosure for an extended period. The keepers would then be asked not to demonstrate or train the animals in the target behavior, but to report back to the researchers if they observe the behavior emerge during this extended period. Alongside keeper reports, video cameras could be installed in the enclosure to minimize the chance of false negatives and to allow for coding and inter-rater reliability to be carried out on the videos. These long-term baselines therefore provide extended enrichment opportunities for the animals, alongside allowing the zoological institution to publicize their involvement with the study and guests to observe animals interacting with different testing apparatuses and tools. Finally, long-term baselines can provide invaluable insight on the individual and social learning abilities of primates as well as the potential development stages and sensitive learning periods required for specific behaviors.

Infrared thermography cannot be used to approximate core body temperature in wild primates.

Understanding the physiological processes that underpin primate performance is key if we are to assess how a primate might respond when navigating new and changing environments. Given the connection between a mammal's ability to thermoregulate and the changing demands of its thermal environment, increasing attention is being devoted to the study of thermoregulatory processes as a means to assess primate performance. Infrared thermography can be used to record the body surface temperatures of free-ranging animals. However, some uncertainty remains as to how these measurements can be used to approximate core body temperature. Here, we use data collected from wild vervet monkeys (Chlorocebus pygerythrus) to examine the relationship between infrared body surface temperature, core body (intra-abdominal) temperature, and local climate, to determine to what extent surface temperatures reflect core body temperature. While we report a positive association between surface and core body temperature-a finding that has previously been used to justify the use of surface temperature measurements as a proxy for core temperature regulation-when we controlled for the effect of the local climate in our analyses, this relationship was no longer observed. That is, body surface temperatures were solely predicted by local climate, and not core body temperatures, suggesting that surface temperatures tell us more about the environment a primate is in, and less about the thermal status of its body core in that environment. Despite the advantages of a noninvasive means to detect and record animal temperatures, infrared thermography alone cannot be used to approximate core body temperature in wild primates.

Squamate bone taphonomy: A new experimental framework and its application to the Natufian zooarchaeological record.

Squamate (lizard and snake) remains are abundant in the terminal Pleistocene Natufian archaeological sites of the Levant, raising the question of whether they constitute part of the broad-spectrum diet characteristic of this period. However, the role of squamates in Natufian diets remains unclear, as they are taphonomically under-studied. We conducted a series of experiments and actualistic observations that tested the impact of pre- and post-depositional processes on squamate vertebrae. We emphasized the multiple destruction processes that leave overlapping or altered marks on the bones, such as digestion marks that were modified by trampling. The resulting bone modification typology provides a tool for studying archaeological squamate remains. The experimental data were compared to the archaeological bone samples of the Natufian sequence of el-Wad Terrace (Mount Carmel, Israel, 15,000-12,000 cal BP). The Natufian squamate samples deviate from all actualistic ones in their lesser evidence of digestion and much greater indications for trampling, erosion and breakage. The taphonomic study, coupled with intra-site analysis, has unraveled the complex depositional history of el-Wad Terrace, enabling us to differentiate between cultural and non-cultural contexts and to identify possible human consumption of the European glass lizard and the large whip snake in the Natufian.

Is 2020 the year when primatologists should cancel fieldwork?

Year 2020 has brought the greatest global pandemic to hit the world since the end of the First World War. The severe acute respiratory syndrome coronavirus 2 and the resulting disease named coronavirus disease 2019 has brought the world to its knees both financially and medically. The American Society of Primatologists has postponed their annual meetings from the end of May 2020 until the end of September 2020, while the International Primatological Society have postponed their biennial congress from August 2020 to August 2021, which has also resulted in their 2022 meetings in Malaysia being pushed back until 2023. Here, I explore the potential dangers of pursuing any primate fieldwork during this pandemic on our study species, their ecosystems, and local peoples. I believe that the risk of bringing this virus into our study ecosystems is too great and that primatologists should cancel all field research until the pandemic ends or a vaccine/reliable treatment is widely available. This is the year we all must become One Health practitioners!

Looking for Mimicry in a Snake Assemblage Using Deep Learning.

Batesian mimicry is a canonical example of evolution by natural selection, popularized by highly colorful species resembling unrelated models with astonishing precision. However, Batesian mimicry could also occur in inconspicuous species and rely on subtle resemblance. Although potentially widespread, such instances have been rarely investigated, such that the real frequency of Batesian mimicry has remained largely unknown. To fill this gap, we developed a new approach using deep learning to quantify the visual resemblance between putative mimics and models from photographs. We applied this method to Western Palearctic snakes. Potential nonvenomous mimics were revealed by an excess of resemblance to sympatric venomous snakes compared with random expectations. We found that 8% of the nonvenomous species were potential mimics, although they resembled their models imperfectly. This study is the first to quantify the frequency of Batesian mimicry in a whole community of vertebrates, and it shows that even concealed species can act as potential models. Our approach should prove useful for detecting mimicry in other communities, and more generally it highlights the benefits of deep learning for quantitative studies of phenotypic resemblance.

An automated aquatic rack system for rearing marine invertebrates.

BACKGROUND: One hundred years ago, marine organisms were the dominant systems for the study of developmental biology. The challenges in rearing these organisms outside of a marine setting ultimately contributed to a shift towards work on a smaller number of so-called model systems. Those animals are typically non-marine organisms with advantages afforded by short life cycles, high fecundity, and relative ease in laboratory culture. However, a full understanding of biodiversity, evolution, and anthropogenic effects on biological systems requires a broader survey of development in the animal kingdom. To this day, marine organisms remain relatively understudied, particularly the members of the Lophotrochozoa (Spiralia), which include well over one third of the metazoan phyla (such as the annelids, mollusks, flatworms) and exhibit a tremendous diversity of body plans and developmental modes. To facilitate studies of this group, we have previously described the development and culture of one lophotrochozoan representative, the slipper snail Crepidula atrasolea, which is easy to rear in recirculating marine aquaria. Lab-based culture and rearing of larger populations of animals remain a general challenge for many marine organisms, particularly for inland laboratories. RESULTS: Here, we describe the development of an automated marine aquatic rack system for the high-density culture of marine species, which is particularly well suited for rearing filter-feeding animals. Based on existing freshwater recirculating aquatic rack systems, our system is specific to the needs of marine organisms and incorporates robust filtration measures to eliminate wastes, reducing the need for regular water changes. In addition, this system incorporates sensors and associated equipment for automated assessment and adjustment of water quality. An automated feeding system permits precise delivery of liquid food (e.g., phytoplankton) throughout the day, mimicking real-life feeding conditions that contribute to increased growth rates and fecundity. CONCLUSION: This automated system makes laboratory culture of marine animals feasible for both large and small research groups, significantly reducing the time, labor, and overall costs needed to rear these organisms.

Methodological Considerations for Using Fecal Glucocorticoid Metabolite Concentrations as an Indicator of Physiological Stress in the Brown Bear (Ursus arctos).

Reliable methods to measure stress-related glucocorticoid responses in free-ranging animals are important for wildlife management and conservation. Such methods are also paramount for our ability to improve our knowledge of the ecological consequences of physiological processes. The brown bear (Ursus arctos) is a large carnivore of ecological and cultural importance and is important for management. Here, we provide a physiological validation for an enzyme immunoassay (EIA) to quantify glucocorticoid metabolites in brown bear feces. We also provide an evaluation of the effects of sample exposure to ambient temperature on measured fecal glucocorticoid metabolite (fGCM) concentrations. We evaluated three EIA systems: a cortisol assay, an 11-oxoetiocholanolone assay, and an 11ß-hydroxyetiocholanolone assay. Of these, the cortisol assay provided the best discrimination between peak fGCM concentrations detected 1-4 d after injections of synthetic adrenocorticotrophic hormone and preinjection baseline concentrations in four individual brown bears. The time of exposure to ambient temperature had substantial but variable effects on measured fGCM concentrations, including variation both between samples from the same individual and among samples from different bears. We propose that the validated EIA system for measuring fGCM concentrations in the brown bear could be a useful noninvasive method to monitor stress in this species. However, we highlight that this method requires that fecal samples be frozen immediately after defecation, which could be a limitation in many field situations.

The Value of Experimental Approaches in Migration Biology.

The past several decades have ushered in a golden age in the study of migration biology, leading to a wealth of descriptive articles that characterize various aspects of migration and its implications for individuals, populations, and ecosystems. However, relatively few studies have adopted an experimental approach to the study of migration, and fewer still have combined lab and field experiments to glean insights into the mechanisms underlying variation in migration behavior and success. Understanding the proximate and ultimate causes of migration timing, energy allocation and optimization, migration success, and fitness is important to aid the conservation and management of wildlife populations by establishing appropriate protections or managing environmental conditions that influence migration. With recent technological advances and miniaturization of animal-borne electronic tracking devices, as well as ground-, water-, and space-based telemetry infrastructure, researchers have the tools necessary to experimentally test hypotheses central to the mechanics of migrations and individual variation therein. By pairing physiological measurements, molecular analyses, and other approaches within an experimental framework, there is the potential to understand not only how animal migrations function but also what differentiates successful migrations from failed migrations and the associated fitness implications. Experimental approaches to migration biology are particularly important, as they will help us to better comprehend and hopefully predict animal responses to environmental and anthropogenic changes by isolating confounding variables that challenge inferences from observations.

Eyes in the Sky: Assessing the Feasibility of Low-Cost, Ready-to-Use Unmanned Aerial Vehicles to Monitor Primate Populations Directly.

Primates face many climate and land use change threats, making long-term population monitoring critical to prioritizing conservation efforts. Ground-based line transects are typically conducted to estimate and monitor primate populations. However, transects may be costly and logistically challenging. We sought to test whether low-cost (<5,000 USD), ready-to-use unmanned aerial vehicles (UAVs) could effectively monitor primate populations in north-eastern Madagascar. Critically Endangered [A3cd] golden-crowned sifakas (Propithecus tattersalli) are medium-sized, white lemurs whose creamy colour contrasts against defoliated tree canopies, making them an ideal study species for aerial counts. Quad-copter UAV flights over sifaka groups did not elicit antipredator responses. Photographs demonstrated the ability of UAVs to capture viable imagery of sifakas from approximately 20 m above ground level. Unfortunately, crashes resulting from an inability to programme automated flights over hilly forests cut this pilot study short, highlighting several challenges that remain to implementing UAVs in remote field studies. This study demonstrates that while UAVs offer considerable promise in the future of primate research and conservation, high start-up costs and remote field conditions provide challenging obstacles to first time users hoping to use this exciting new technology. Furthermore, we strongly recommend that thermal cameras be used for direct primate counts with UAVs.

Determinants of Cardiac Growth and Size.

Within the realm of zoological study, the question of how an organism reaches a specific size has been largely unexplored. Recently, studies performed to understand the regulation of organ size have revealed that both cellular signals and external cues contribute toward the determination of total cell mass within each organ. The establishment of final organ size requires the precise coordination of cell growth, proliferation, and survival throughout development and postnatal life. In the mammalian heart, the regulation of size is biphasic. During development, cardiomyocyte proliferation predominantly determines cardiac growth, whereas in the adult heart, total cell mass is governed by signals that regulate cardiac hypertrophy. Here, we review the current state of knowledge regarding the extrinsic factors and intrinsic mechanisms that control heart size during development. We also discuss the metabolic switch that occurs in the heart after birth and precedes homeostatic control of postnatal heart size.

Traditional medicinal animal use by Xhosa and Sotho communities in the Western Cape Province, South Africa.

BACKGROUND: The use of animals and animal-derived materials in traditional medicine constitutes an important part of the belief systems of indigenous African cultures. It is believed to be rapidly expanding in South Africa, where traditional healers are estimated to outnumber western doctors by 2000:1 in some areas, with an overall clientele consisting of 60-80% of South African citizens. Despite concerns about the impact of the trade in traditional medicine on biodiversity, there has been only limited research on this topic in South Africa. METHODS: Traditional Xhosa and Sotho healers operating from impoverished, rural communities in the Boland Region of the Western Cape Province were consulted to provide a comprehensive inventory of the number and frequency of animals used and sold. Species richness estimators, diversity indices, and a relative cultural importance (RCI) index were used to highlight species of concern and assess market dynamics. RESULTS: A total of 26 broad use categories for 12 types of animal parts or products from 71 species or morphospecies were recorded. The most commonly sold items were skin pieces, oil or fat, and bones. Results showed that leopard, chacma baboon, Cape porcupine, monitor lizard species, puff adder, African rock python, and black-backed jackal were the species most used in the traditional medicinal trade. CONCLUSIONS: This study extends existing knowledge on the trade of animals in South African healing practices and provides the first attempt in the Western Cape to quantify wildlife use for cultural traditions. The results have relevance for setting conservation priorities and may assist in effective policy development inclusive of ecological sustainability priorities, as well as cultural demands.

Swimbladder morphology masks Southern Ocean mesopelagic fish biomass.

Within the twilight of the oceanic mesopelagic realm, 200-1000 m below sea level, are potentially vast resources of fish. Collectively, these mesopelagic fishes are the most abundant vertebrates on Earth, and this global fish community plays a vital role in the function of oceanic ecosystems. The biomass of these fishes has recently been estimated using acoustic survey methods, which rely on echosounder-generated signals being reflected from gas-filled swimbladders and detected by transducers on vessels. Here, we use X-ray computed tomography scans to demonstrate that several of the most abundant species of mesopelagic fish in the Southern Ocean lack gas-filled swimbladders. We also show using catch data from survey trawls that the fish community switches from fish possessing gas-filled swimbladders to those lacking swimbladders as latitude increases towards the Antarctic continent. Thus, the acoustic surveys that repeatedly show a decrease in mesopelagic fish biomass towards polar environments systematically overlook a large proportion of fish species that dominate polar seas. Importantly, this includes lanternfish species that are key prey items for top predators in the region, including king penguins and elephant seals. This latitudinal community switch, from gas to non-gas dominance, has considerable implications for acoustic biomass estimation, ecosystem modelling and long-term monitoring of species at risk from climate change and potential exploitation.

Monkey business: Collaborating to grow an ecological physiology of primates.

The lab and field provide differing approaches to studying primate biology. We outline the challenges and benefits of these approaches and demonstrate how collaboration can help bridge these perspectives to provide complementary insight into primate adaptive pathways. With this aim, our collaboration has made tangible insights into the ecological physiology of several primate species, and also yielded more subtle, intangible professional benefits.

DolFin: an innovative digital platform for studying Risso's dolphins in the Northern Ionian Sea (North-eastern Central Mediterranean).

The Risso's dolphin is a widely distributed species, found in deep temperate and tropical waters. Estimates of its abundance are available in a few regions, details of its distribution are lacking, and its status in the Mediterranean Sea is ranked as Data Deficient by the IUCN Red List. In this paper, a synergy between bio-ecological analysis and innovative strategies has been applied to construct a digital platform, DolFin. It contains a collection of sighting data and geo-referred photos of Grampus griseus, acquired from 2013 to 2016 in the Gulf of Taranto (Northern Ionian Sea, North-eastern Central Mediterranean Sea), and the first automated tool for Smart Photo Identification of the Risso's dolphin (SPIR). This approach provides the capability to collect and analyse significant amounts of data acquired over wide areas and extended periods of time. This effort establishes the baseline for future large-scale studies, essential to providing further information on the distribution of G. griseus. Our data and analysis results corroborate the hypothesis of a resident Risso's dolphin population in the Gulf of Taranto, showing site fidelity in a relatively restricted area characterized by a steep slope to around 800 m in depth, north of the Taranto Valley canyon system.

A new approach for measuring temperature inside turtle eggs.

For turtles, the thermal environment experienced during development plays critical roles in many biological processes. While the temperature inside an egg is assumed to match the substrate temperature, many factors such as evaporative cooling, metabolic heating and the insulating properties of extra-embryonic components can lead to thermal differences. However, no method developed to date has allowed for measurement of the embryonic temperature in live chelonian eggs. We designed a thermocouple-based technique to measure embryonic temperature, achieving 94% survival in Trachemys scripta This methodology may be applicable to other reptile species. We found that, while the temperature in the substrate adjacent to the eggshell accurately reflects the internal egg temperature, it differs from air temperature (∼2°C) in a moisture-dependent manner. Our results demonstrate that external egg temperature, but not air temperature, is suitable for assessing the effects of temperature on biological processes, which could be critical when considering that processes such as temperature-dependent sex determination in turtles occurs within a 4°C window.